analyses defaultSchema

Term	Description	Type	Properties	Example	Enum
aligner	Reference to mapping/alignment software	string	NA	bwa-0.7.8	NA
analysisDate	Date at which analysis was performed.	string	NA	2021-10-17	NA
biosampleId	Reference to the id of the biosample this analysis is reporting on.	string	NA	S0001	NA
id	Analysis reference ID (external accession or internal ID)	string	NA	NA	NA
individualId	Reference to the id of the individual this analysis is reporting on.	string	NA	P0001	NA
info	Placeholder to allow the Beacon to return any additional information that is necessary or could be of interest in relation to the query or the entry returned. It is recommended to encapsulate additional informations in this attribute instead of directly adding attributes at the same level than the others in order to avoid collision in the names of attributes in future versions of the specification.	object	NA	NA	NA
pipelineName	Analysis pipeline and version if a standardized pipeline was used	string	NA	Pipeline-panel-0001-v1	NA
pipelineRef	Link to Analysis pipeline resource	string	NA	doi.org/10.48511/workflowhub.workflow.111.1	NA
runId	Run identifier (external accession or internal ID).	string	NA	SRR10903401	NA
variantCaller	Reference to variant calling software / pipeline	string	NA	GATK4.0	NA

Examples

These are examples extracted directly from the GitHub repository.

MINMAX

{
    "$schema": "https://json-schema.org/draft/2020-12/schema",
    "analysisDate": "2021-10-17",
    "id": "analyses-example-0001",
    "pipelineName": "Pipeline-panel-0001-v1"
}

{
    "$schema": "https://json-schema.org/draft/2020-12/schema",
    "aligner": "bwa-0.7.8",
    "analysisDate": "2021-10-17",
    "biosampleId": "S0001",
    "id": "analyses-example-0001",
    "individualId": "P0001",
    "pipelineName": "Pipeline-panel-0001-v1",
    "pipelineRef": "https://doi.org/10.48511/workflowhub.workflow.111.1",
    "runId": "SRR10903401",
    "variantCaller": "GATK4.0"
}