runs defaultSchema

Term	Description	Type	Properties	Example	Enum
biosampleId	Reference to the biosample ID.	string	NA	008dafdd-a3d1-4801-8c0a-8714e2b58e48	NA
id	Run ID.	string	NA	SRR10903401	NA
individualId	Reference to the individual ID.	string	NA	TCGA-AO-A0JJ	NA
info	Placeholder to allow the Beacon to return any additional information that is necessary or could be of interest in relation to the query or the entry returned. It is recommended to encapsulate additional informations in this attribute instead of directly adding attributes at the same level than the others in order to avoid collision in the names of attributes in future versions of the specification.	object	NA	NA	NA
libraryLayout	Ontology value for the library layout e.g "PAIRED", "SINGLE" #todo add Ontology name?	string	NA	NA	PAIRED, SINGLE
librarySelection	Selection method for library preparation, e.g "RANDOM", "RT-PCR"	string	NA	RANDOM, RT-PCR	NA
librarySource	Ontology value for the source of the sequencing or hybridization library, e.g "genomic source", "transcriptomic source"	object	id, label	`[{"id": "GENEPIO:0001966", "label": "genomic source"}, {"id": "GENEPIO:0001965", "label": "metagenomic source"}]`	NA
libraryStrategy	Library strategy, e.g. "WGS"	string	NA	WGS	NA
platform	General platform technology label. It SHOULD be a subset of the platformModel and used only for query convenience, e.g. "return everything sequenced with Illimuna", where the specific model is not relevant	string	NA	Illumina, Oxford Nanopore, Affymetrix	NA
platformModel	Ontology value for experimental platform or methodology used. For sequencing platforms the use of "OBI:0400103 - DNA sequencer" is suggested.	object	id, label	`[{"id": "OBI:0002048", "label": "Illumina HiSeq 3000"}, {"id": "OBI:0002750", "label": "Oxford Nanopore MinION"}, {"id": "EFO:0010938", "label": "large-insert clone DNA microarray"}]`	NA
runDate	Date at which the experiment was performed.	string	NA	2021-10-18	NA

Examples¶

These are examples extracted directly from the GitHub repository.

MINMAX

{
    "$schema": "https://json-schema.org/draft/2020-12/schema",
    "biosampleId": "008dafdd-a3d1-4801-8c0a-8714e2b58e48",
    "id": "SRR10903401",
    "runDate": "2021-10-18"
}

{
    "$schema": "https://json-schema.org/draft/2020-12/schema",
    "biosampleId": "008dafdd-a3d1-4801-8c0a-8714e2b58e48",
    "id": "SRR10903401",
    "individualId": "TCGA-AO-A0JJ",
    "libraryLayout": "PAIRED",
    "librarySelection": "RANDOM",
    "librarySource": {
        "id": "GENEPIO:0001966",
        "label": "genomic source"
    },
    "libraryStrategy": "WGS",
    "platform": "Illumina",
    "platformModel": {
        "id": "OBI:0002048",
        "label": "Illumina HiSeq 3000"
    },
    "runDate": "2021-10-18"
}