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Runs

Term Description Type Properties Example Enum
biosampleId Reference to the biosample ID. string NA 008dafdd-a3d1-4801-8c0a-8714e2b58e48 NA
id Run ID. string NA SRR10903401 NA
individualId Reference to the individual ID. string NA TCGA-AO-A0JJ NA
info Placeholder to allow the Beacon to return any additional information that is necessary or could be of interest in relation to the query or the entry returned. It is recommended to encapsulate additional informations in this attribute instead of directly adding attributes at the same level than the others in order to avoid collision in the names of attributes in future versions of the specification. object NA NA NA
libraryLayout Ontology value for the library layout e.g "PAIRED", "SINGLE" #todo add Ontology name? string NA NA PAIRED, SINGLE
librarySelection Selection method for library preparation, e.g "RANDOM", "RT-PCR" string NA RANDOM, RT-PCR NA
librarySource Definition of an ontology term. object id, label NA NA
libraryStrategy Library strategy, e.g. "WGS" string NA WGS NA
platform General platform technology label. It SHOULD be a subset of the platformModel and used only for query convenience, e.g. "return everything sequenced with Illimuna", where the specific model is not relevant string NA Illumina, Oxford Nanopore, Affymetrix NA
platformModel Definition of an ontology term. object id, label NA NA
runDate Date at which the experiment was performed. string NA 2021-10-18 NA

Examples

These are examples extracted directly from the GitHub repository.

{
    "$schema": "https://json-schema.org/draft/2020-12/schema",
    "biosampleId": "008dafdd-a3d1-4801-8c0a-8714e2b58e48",
    "id": "SRR10903401",
    "runDate": "2021-10-18"
}
{
    "$schema": "https://json-schema.org/draft/2020-12/schema",
    "biosampleId": "008dafdd-a3d1-4801-8c0a-8714e2b58e48",
    "id": "SRR10903401",
    "individualId": "TCGA-AO-A0JJ",
    "libraryLayout": "PAIRED",
    "librarySelection": "RANDOM",
    "librarySource": {
        "id": "GENEPIO:0001966",
        "label": "genomic source"
    },
    "libraryStrategy": "WGS",
    "platform": "Illumina",
    "platformModel": {
        "id": "OBI:0002048",
        "label": "Illumina HiSeq 3000"
    },
    "runDate": "2021-10-18"
}